diff options
Diffstat (limited to 'util/validate-outputs.py')
| -rwxr-xr-x | util/validate-outputs.py | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/util/validate-outputs.py b/util/validate-outputs.py new file mode 100755 index 0000000..14e1ad1 --- /dev/null +++ b/util/validate-outputs.py @@ -0,0 +1,28 @@ +#!/usr/bin/python3 + +"""Check the output of each example for validity against the PDBx + and ModelCIF dictionaries. + + This should be periodically rechecked in case the PDBx and ModelCIF + dictionaries are updated. +""" + +import sys +import os +import subprocess +import ihm.dictionary +import urllib.request + +with urllib.request.urlopen( + 'https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ma.dic') as fh: + pdbx_mcif = ihm.dictionary.read(fh) + +for script in ('mkmodbase.py', 'ligands.py'): + print(script) + subprocess.check_call([sys.executable, '../examples/' + script]) + with open('output.cif') as fh: + try: + pdbx_mcif.validate(fh) + except ihm.dictionary.ValidatorError as exc: + print(exc) +os.unlink('output.cif') |
