Mailman 3 July 2007 - NumPy-Discussion

arange and linspace could take an output array
by Carlos Pita July 4, 2007

July 4, 2007

Hi all, I have a few cases where an output array with samples for a linear envelope should be composed by several linear segments, each one the output of arange o linspace. It would be preferable in terms of performance to write this segments directly to subviews of the output array instead of generating temporary arrays and then copying them to the final one. So why don't provide output arguments for arange and linspace? Thank you in advance. Cheers, Carlos

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arange and linspace could take an output array
by Carlos Pita July 4, 2007

July 4, 2007

Hi all, I have a few cases where an output array with samples for a linear envelope should be composed by several linear segments, each one the output of arange o linspace. It would be preferable in terms of performance to write this segments directly to subviews of the output array instead of generating temporary arrays and then copying them to the final one. So why don't provide output arguments for arange and linspace? Thank you in advance. Cheers, Carlos

1 0

arr.dtype.byteorder == '=' --- is this "good code"
by Sebastian Haase July 3, 2007

July 3, 2007

Hi, Suppose I'm on a little-edian system. Could I have a little-endian numpy array arr, where arr.dtype.byteorder would actually be "<" instead of "=" !? There are two kinds of systems: little edian and big endian. But there are three possible byteorder values: "<", ">" and "=" I assume that if arr.dtype.byteorder is "=" then, even on a little endian system the comparison arr.dtype.byteorder == "<" still fails !? Or are the == and != operators overloaded !? Thanks, Sebastian Haase

2 4

gfortran config probs
by Mathew July 2, 2007

July 2, 2007

Just realized this might be important .... I'm using Python2.5.1

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output from python setup.py -v config_fc --fcompiler=gnu95 build
by Mathew July 1, 2007

July 1, 2007

Running from numpy source directory. F2PY Version 2_3875 blas_opt_info: blas_mkl_info: ( library_dirs = /u/vento0/myeates/lib ) ( include_dirs = /u/vento0/myeates/include ) (paths: ) (paths: ) (paths: ) (paths: ) (paths: ) (paths: ) libraries mkl,vml,guide not found in /u/vento0/myeates/lib NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS ( library_dirs = /u/vento0/myeates/lib ) (paths: ) (paths: ) (paths: /u/vento0/myeates/lib/libptf77blas.a) (paths: ) (paths: /u/vento0/myeates/lib/libptcblas.a) (paths: ) (paths: /u/vento0/myeates/lib/libatlas.a) Setting PTATLAS=ATLAS ( include_dirs = /u/vento0/myeates/include ) (paths: /u/vento0/myeates/include/atlas) (paths: /u/vento0/myeates/include/cblas.h) Setting PTATLAS=ATLAS ( library_dirs = /u/vento0/myeates/lib ) (paths: ) FOUND: libraries = ['ptf77blas', 'ptcblas', 'atlas'] library_dirs = ['/u/vento0/myeates/lib'] language = c include_dirs = ['/u/vento0/myeates/include'] new_compiler returns distutils.unixccompiler.UnixCCompiler customize GnuFCompiler find_executable('gfortran') Found executable /u/vento0/myeates/bin/gfortran gnu: no Fortran 90 compiler found find_executable('g77') Found executable /usr/bin/g77 gnu: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/H-vRSk ) > /u/vento0/myeates/tmp/tmpLMMu5C/Yd7QL7 2>&1') _update_environment(...) exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/d_szfA ) > /u/vento0/myeates/tmp/tmpLMMu5C/fZ5ec4 2>&1') _update_environment(...) customize IntelFCompiler find_executable('ifort') Could not locate executable ifort find_executable('ifc') Could not locate executable ifc intel: no Fortran 90 compiler found intel: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.f -o /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.o',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.f -o /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/AHIIwF ) > /u/vento0/myeates/tmp/tmpLMMu5C/Fi1kn7 2>&1') _update_environment(...) customize LaheyFCompiler find_executable('lf95') Could not locate executable lf95 lahey: no Fortran 90 compiler found lahey: no Fortran 90 compiler found customize PGroupFCompiler find_executable('pgf90') Could not locate executable pgf90 pg: no Fortran 90 compiler found pg: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -V 2>/dev/null',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -V 2>/dev/null ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/kGF8Rq ) > /u/vento0/myeates/tmp/tmpLMMu5C/NtOI3R 2>&1') _update_environment(...) customize AbsoftFCompiler find_executable('f90') Could not locate executable f90 absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found customize NAGFCompiler find_executable('f95') Found executable /usr/bin/f95 exec_command('/usr/bin/f95 -V',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /usr/bin/f95 -V ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/NKg7zm ) > /u/vento0/myeates/tmp/tmpLMMu5C/x2jghP 2>&1') _update_environment(...) customize VastFCompiler exec_command('vf90 -v',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( vf90 -v ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/KTkOOb ) > /u/vento0/myeates/tmp/tmpLMMu5C/tzT59j 2>&1') _update_environment(...) customize GnuFCompiler gnu: no Fortran 90 compiler found gnu: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/I96QMG ) > /u/vento0/myeates/tmp/tmpLMMu5C/uQzJd6 2>&1') _update_environment(...) exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/ERt5Q- ) > /u/vento0/myeates/tmp/tmpLMMu5C/wjhtP_ 2>&1') _update_environment(...) exec_command(['gfortran', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/qZPmMe ) > /u/vento0/myeates/tmp/tmpLMMu5C/synxJq 2>&1') _update_environment(...) customize CompaqFCompiler find_executable('fort') Could not locate executable fort compaq: no Fortran 90 compiler found compaq: no Fortran 90 compiler found customize IntelItaniumFCompiler find_executable('efort') Could not locate executable efort find_executable('efc') Could not locate executable efc intele: no Fortran 90 compiler found intele: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.f -o /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.o',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.f -o /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/79gEEW ) > /u/vento0/myeates/tmp/tmpLMMu5C/n7Ivyf 2>&1') _update_environment(...) customize IntelEM64TFCompiler intelem: no Fortran 90 compiler found intelem: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.o',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/b2Erz4 ) > /u/vento0/myeates/tmp/tmpLMMu5C/dI6JCf 2>&1') _update_environment(...) customize Gnu95FCompiler exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/gLsenB ) > /u/vento0/myeates/tmp/tmpLMMu5C/02KDUq 2>&1') _update_environment(...) exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/lLmpG0 ) > /u/vento0/myeates/tmp/tmpLMMu5C/FAS9YE 2>&1') _update_environment(...) customize Gnu95FCompiler exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/YOA7z8 ) > /u/vento0/myeates/tmp/tmpLMMu5C/Hc_ucY 2>&1') _update_environment(...) exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/F1wTPM ) > /u/vento0/myeates/tmp/tmpLMMu5C/tZDD78 2>&1') _update_environment(...) customize Gnu95FCompiler using config ******************************************************************************** numpy.distutils.fcompiler.gnu.Gnu95FCompiler compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] ranlib = ['/u/vento0/myeates/bin/gfortran'] linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall'] archiver = ['/u/vento0/myeates/bin/gfortran', '-cr'] version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version'] linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared'] compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] version = LooseVersion ('4.2.0') libraries = ['gfortran'] library_dirs = [] object_switch = '-o ' compile_switch = '-c' include_dirs = [] ******************************************************************************** compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC compile options: '-c' gcc: _configtest.c exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-c', '_configtest.c', '-o', '_configtest.o'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/B-Auj9 ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/d56lI5 ') _update_environment(...) gcc -pthread _configtest.o -L/u/vento0/myeates/lib -lptf77blas -lptcblas -latlas -o _configtest exec_command(['gcc', '-pthread', '_configtest.o', '-L/u/vento0/myeates/lib', '-lptf77blas', '-lptcblas', '-latlas', '-o', '_configtest'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gcc -pthread _configtest.o -L/u/vento0/myeates/lib -lptf77blas -lptcblas -latlas -o _configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/MpN72s ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/CJjxty ') _update_environment(...) exec_command('./_configtest',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( ./_configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/guY8sT ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/BuHCk9 ') ATLAS version 3.7.34 built by myeates on Sat Jun 30 07:21:04 PDT 2007: UNAME : Linux mu.jpl.nasa.gov 2.6.17-5mdv #1 SMP Wed Sep 13 14:28:02 EDT 2006 x86_64 Dual-Core AMD Opteron(tm) Processor 2220 SE GNU/Linux INSTFLG : -1 0 -a 1 ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_HAMMER -DATL_CPUMHZ=2800 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_3DNow -DATL_USE64BITS -DATL_GAS_x8664 F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle CACHEEDGE: 524288 F77 : gfortran, version GNU Fortran (GCC) 4.2.0 F77FLAGS : -O -m64 SMC : gcc, version gcc (GCC) 4.2.0 SMCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64 SKC : gcc, version gcc (GCC) 4.2.0 SKCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64 _update_environment(...) success! removing: _configtest.c _configtest.o _configtest ( library_dirs = /u/vento0/myeates/lib ) FOUND: libraries = ['ptf77blas', 'ptcblas', 'atlas'] library_dirs = ['/u/vento0/myeates/lib'] language = c define_macros = [('ATLAS_INFO', '"\\"3.7.34\\""')] include_dirs = ['/u/vento0/myeates/include'] lapack_opt_info: lapack_mkl_info: mkl_info: ( library_dirs = /u/vento0/myeates/lib ) ( include_dirs = /u/vento0/myeates/include ) (paths: ) (paths: ) (paths: ) (paths: ) (paths: ) (paths: ) libraries mkl,vml,guide not found in /u/vento0/myeates/lib NOT AVAILABLE NOT AVAILABLE atlas_threads_info: Setting PTATLAS=ATLAS ( library_dirs = /u/vento0/myeates/lib ) (paths: ) (paths: ) (paths: /u/vento0/myeates/lib/libptf77blas.a) (paths: ) (paths: /u/vento0/myeates/lib/libptcblas.a) (paths: ) (paths: /u/vento0/myeates/lib/libatlas.a) (paths: ) (paths: ) libraries lapack_atlas not found in /u/vento0/myeates/lib (paths: ) (paths: ) (paths: /u/vento0/myeates/lib/liblapack.a) numpy.distutils.system_info.atlas_threads_info Setting PTATLAS=ATLAS ( include_dirs = /u/vento0/myeates/include ) (paths: /u/vento0/myeates/include/atlas) (paths: /u/vento0/myeates/include/cblas.h) Setting PTATLAS=ATLAS ( library_dirs = /u/vento0/myeates/lib ) (paths: ) FOUND: libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas'] library_dirs = ['/u/vento0/myeates/lib'] language = f77 include_dirs = ['/u/vento0/myeates/include'] new_compiler returns distutils.unixccompiler.UnixCCompiler customize GnuFCompiler gnu: no Fortran 90 compiler found gnu: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/OCLLl7 ) > /u/vento0/myeates/tmp/tmpLMMu5C/H-_Pgq 2>&1') _update_environment(...) exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/VHKDTn ) > /u/vento0/myeates/tmp/tmpLMMu5C/bwC_v7 2>&1') _update_environment(...) customize IntelFCompiler intel: no Fortran 90 compiler found intel: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.f -o /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.o',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.f -o /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/a9R240 ) > /u/vento0/myeates/tmp/tmpLMMu5C/hn-ImC 2>&1') _update_environment(...) customize LaheyFCompiler lahey: no Fortran 90 compiler found lahey: no Fortran 90 compiler found customize PGroupFCompiler pg: no Fortran 90 compiler found pg: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -V 2>/dev/null',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -V 2>/dev/null ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/3nk0lG ) > /u/vento0/myeates/tmp/tmpLMMu5C/jEg6GC 2>&1') _update_environment(...) customize AbsoftFCompiler absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found customize NAGFCompiler exec_command('/usr/bin/f95 -V',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /usr/bin/f95 -V ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/Q-aL48 ) > /u/vento0/myeates/tmp/tmpLMMu5C/uvRgga 2>&1') _update_environment(...) customize VastFCompiler exec_command('vf90 -v',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( vf90 -v ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/g0Szj_ ) > /u/vento0/myeates/tmp/tmpLMMu5C/mKSG6N 2>&1') _update_environment(...) customize GnuFCompiler gnu: no Fortran 90 compiler found gnu: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/wikoov ) > /u/vento0/myeates/tmp/tmpLMMu5C/gjbIQY 2>&1') _update_environment(...) exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/mruRLr ) > /u/vento0/myeates/tmp/tmpLMMu5C/OmXX9f 2>&1') _update_environment(...) exec_command(['gfortran', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/Fn57SO ) > /u/vento0/myeates/tmp/tmpLMMu5C/0DfaIZ 2>&1') _update_environment(...) customize CompaqFCompiler compaq: no Fortran 90 compiler found compaq: no Fortran 90 compiler found customize IntelItaniumFCompiler intele: no Fortran 90 compiler found intele: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.f -o /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.o',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.f -o /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/kriUi2 ) > /u/vento0/myeates/tmp/tmpLMMu5C/ch14hM 2>&1') _update_environment(...) customize IntelEM64TFCompiler intelem: no Fortran 90 compiler found intelem: no Fortran 90 compiler found exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.o',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/eaPIf_ ) > /u/vento0/myeates/tmp/tmpLMMu5C/TnJiVS 2>&1') _update_environment(...) customize Gnu95FCompiler exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/wvSK7- ) > /u/vento0/myeates/tmp/tmpLMMu5C/nUO1Kp 2>&1') _update_environment(...) exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/2QQQFY ) > /u/vento0/myeates/tmp/tmpLMMu5C/2TLQzp 2>&1') _update_environment(...) customize Gnu95FCompiler exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/A0DmWo ) > /u/vento0/myeates/tmp/tmpLMMu5C/ASrh0F 2>&1') _update_environment(...) exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/VwDuFd ) > /u/vento0/myeates/tmp/tmpLMMu5C/ocIVDi 2>&1') _update_environment(...) customize Gnu95FCompiler using config ******************************************************************************** numpy.distutils.fcompiler.gnu.Gnu95FCompiler compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] ranlib = ['/u/vento0/myeates/bin/gfortran'] linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall'] archiver = ['/u/vento0/myeates/bin/gfortran', '-cr'] version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version'] linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared'] compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] version = LooseVersion ('4.2.0') libraries = ['gfortran'] library_dirs = [] object_switch = '-o ' compile_switch = '-c' include_dirs = [] ******************************************************************************** compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC compile options: '-c' gcc: _configtest.c exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-c', '_configtest.c', '-o', '_configtest.o'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/Xxndg2 ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/8in3PJ ') _update_environment(...) gcc -pthread _configtest.o -L/u/vento0/myeates/lib -llapack -lptf77blas -lptcblas -latlas -o _configtest exec_command(['gcc', '-pthread', '_configtest.o', '-L/u/vento0/myeates/lib', '-llapack', '-lptf77blas', '-lptcblas', '-latlas', '-o', '_configtest'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gcc -pthread _configtest.o -L/u/vento0/myeates/lib -llapack -lptf77blas -lptcblas -latlas -o _configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/LUsSBg ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/QYn69k ') _update_environment(...) exec_command('./_configtest',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( ./_configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/eqP6-0 ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/IWTPqL ') ATLAS version 3.7.34 built by myeates on Sat Jun 30 07:21:04 PDT 2007: UNAME : Linux mu.jpl.nasa.gov 2.6.17-5mdv #1 SMP Wed Sep 13 14:28:02 EDT 2006 x86_64 Dual-Core AMD Opteron(tm) Processor 2220 SE GNU/Linux INSTFLG : -1 0 -a 1 ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_HAMMER -DATL_CPUMHZ=2800 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_3DNow -DATL_USE64BITS -DATL_GAS_x8664 F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle CACHEEDGE: 524288 F77 : gfortran, version GNU Fortran (GCC) 4.2.0 F77FLAGS : -O -m64 SMC : gcc, version gcc (GCC) 4.2.0 SMCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64 SKC : gcc, version gcc (GCC) 4.2.0 SKCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64 _update_environment(...) success! removing: _configtest.c _configtest.o _configtest ( library_dirs = /u/vento0/myeates/lib ) FOUND: libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas'] library_dirs = ['/u/vento0/myeates/lib'] language = f77 define_macros = [('ATLAS_INFO', '"\\"3.7.34\\""')] include_dirs = ['/u/vento0/myeates/include'] running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running build_src building py_modules sources building extension "numpy.core.multiarray" sources adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_array_api.py adding 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h' to sources. adding 'build/src.linux-x86_64-2.5/numpy/core/src' to include_dirs. numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/src/scalartypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/src/arraytypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h'] building extension "numpy.core.umath" sources adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_ufunc_api.py adding 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h' to sources. adding 'build/src.linux-x86_64-2.5/numpy/core/src' to include_dirs. numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/src/scalartypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/src/arraytypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h'] building extension "numpy.core._sort" sources adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_array_api.py adding 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h' to sources. numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h'] building extension "numpy.core.scalarmath" sources adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_array_api.py adding 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h' to sources. executing numpy/core/code_generators/generate_ufunc_api.py adding 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h' to sources. numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h', 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h'] building extension "numpy.core._dotblas" sources adding 'numpy/core/blasdot/_dotblas.c' to sources. building extension "numpy.lib._compiled_base" sources building extension "numpy.numarray._capi" sources building extension "numpy.fft.fftpack_lite" sources building extension "numpy.linalg.lapack_lite" sources adding 'numpy/linalg/lapack_litemodule.c' to sources. building extension "numpy.random.mtrand" sources new_compiler returns distutils.unixccompiler.UnixCCompiler customize Gnu95FCompiler exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/TGqdfc ) > /u/vento0/myeates/tmp/tmpLMMu5C/Jp4FUn 2>&1') _update_environment(...) exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/vR92oh ) > /u/vento0/myeates/tmp/tmpLMMu5C/Fwz0tx 2>&1') _update_environment(...) customize Gnu95FCompiler using config ******************************************************************************** numpy.distutils.fcompiler.gnu.Gnu95FCompiler compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] ranlib = ['/u/vento0/myeates/bin/gfortran'] linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall'] archiver = ['/u/vento0/myeates/bin/gfortran', '-cr'] version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version'] linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared'] compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] version = LooseVersion ('4.2.0') libraries = ['gfortran'] library_dirs = [] object_switch = '-o ' compile_switch = '-c' include_dirs = ['numpy/core/src', 'numpy/core/include', '/u/vento0/myeates/include/python2.5'] ******************************************************************************** C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC compile options: '-Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c' gcc: _configtest.c exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-Inumpy/core/src', '-Inumpy/core/include', '-I/u/vento0/myeates/include/python2.5', '-c', '_configtest.c', '-o', '_configtest.o'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c _configtest.c -o _configtest.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/tG_OdT ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/1mNLiu ') _update_environment(...) gcc -pthread _configtest.o -o _configtest exec_command(['gcc', '-pthread', '_configtest.o', '-o', '_configtest'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gcc -pthread _configtest.o -o _configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/WjueIS ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/eTFVrv ') _update_environment(...) _configtest failure. removing: _configtest.c _configtest.o _configtest building data_files sources running build_py not copying numpy/_import_tools.py (output up-to-date) not copying numpy/ctypeslib.py (output up-to-date) not copying numpy/__init__.py (output up-to-date) not copying numpy/setup.py (output up-to-date) not copying numpy/matlib.py (output up-to-date) not copying numpy/add_newdocs.py (output up-to-date) not copying numpy/dual.py (output up-to-date) not copying numpy/version.py (output up-to-date) copying build/src.linux-x86_64-2.5/numpy/__config__.py -> build/lib.linux-x86_64-2.5/numpy not copying numpy/distutils/misc_util.py (output up-to-date) not copying numpy/distutils/core.py (output up-to-date) not copying numpy/distutils/__init__.py (output up-to-date) not copying numpy/distutils/info.py (output up-to-date) not copying numpy/distutils/intelccompiler.py (output up-to-date) not copying numpy/distutils/from_template.py (output up-to-date) not copying numpy/distutils/line_endings.py (output up-to-date) not copying numpy/distutils/system_info.py (output up-to-date) not copying numpy/distutils/conv_template.py (output up-to-date) not copying numpy/distutils/setup.py (output up-to-date) not copying numpy/distutils/cpuinfo.py (output up-to-date) not copying numpy/distutils/environment.py (output up-to-date) not copying numpy/distutils/lib2def.py (output up-to-date) not copying numpy/distutils/interactive.py (output up-to-date) not copying numpy/distutils/extension.py (output up-to-date) not copying numpy/distutils/__version__.py (output up-to-date) not copying numpy/distutils/ccompiler.py (output up-to-date) not copying numpy/distutils/log.py (output up-to-date) not copying numpy/distutils/mingw32ccompiler.py (output up-to-date) not copying numpy/distutils/unixccompiler.py (output up-to-date) not copying numpy/distutils/exec_command.py (output up-to-date) copying build/src.linux-x86_64-2.5/numpy/distutils/__config__.py -> build/lib.linux-x86_64-2.5/numpy/distutils not copying numpy/distutils/command/config_compiler.py (output up-to-date) not copying numpy/distutils/command/build_clib.py (output up-to-date) not copying numpy/distutils/command/egg_info.py (output up-to-date) not copying numpy/distutils/command/__init__.py (output up-to-date) not copying numpy/distutils/command/build.py (output up-to-date) not copying numpy/distutils/command/build_ext.py (output up-to-date) not copying numpy/distutils/command/install_headers.py (output up-to-date) not copying numpy/distutils/command/install_data.py (output up-to-date) not copying numpy/distutils/command/build_scripts.py (output up-to-date) not copying numpy/distutils/command/bdist_rpm.py (output up-to-date) not copying numpy/distutils/command/config.py (output up-to-date) not copying numpy/distutils/command/build_src.py (output up-to-date) not copying numpy/distutils/command/install.py (output up-to-date) not copying numpy/distutils/command/sdist.py (output up-to-date) not copying numpy/distutils/command/build_py.py (output up-to-date) not copying numpy/distutils/fcompiler/absoft.py (output up-to-date) not copying numpy/distutils/fcompiler/mips.py (output up-to-date) not copying numpy/distutils/fcompiler/gnu.py (output up-to-date) not copying numpy/distutils/fcompiler/intel.py (output up-to-date) not copying numpy/distutils/fcompiler/vast.py (output up-to-date) not copying numpy/distutils/fcompiler/__init__.py (output up-to-date) not copying numpy/distutils/fcompiler/none.py (output up-to-date) not copying numpy/distutils/fcompiler/compaq.py (output up-to-date) not copying numpy/distutils/fcompiler/lahey.py (output up-to-date) not copying numpy/distutils/fcompiler/g95.py (output up-to-date) not copying numpy/distutils/fcompiler/hpux.py (output up-to-date) not copying numpy/distutils/fcompiler/nag.py (output up-to-date) not copying numpy/distutils/fcompiler/sun.py (output up-to-date) not copying numpy/distutils/fcompiler/pg.py (output up-to-date) not copying numpy/distutils/fcompiler/ibm.py (output up-to-date) not copying numpy/testing/numpytest.py (output up-to-date) not copying numpy/testing/info.py (output up-to-date) not copying numpy/testing/__init__.py (output up-to-date) not copying numpy/testing/setup.py (output up-to-date) not copying numpy/testing/utils.py (output up-to-date) not copying numpy/f2py/diagnose.py (output up-to-date) not copying numpy/f2py/capi_maps.py (output up-to-date) not copying numpy/f2py/rules.py (output up-to-date) not copying numpy/f2py/info.py (output up-to-date) not copying numpy/f2py/common_rules.py (output up-to-date) not copying numpy/f2py/auxfuncs.py (output up-to-date) not copying numpy/f2py/cb_rules.py (output up-to-date) not copying numpy/f2py/__init__.py (output up-to-date) not copying numpy/f2py/setup.py (output up-to-date) not copying numpy/f2py/use_rules.py (output up-to-date) not copying numpy/f2py/f90mod_rules.py (output up-to-date) not copying numpy/f2py/f2py2e.py (output up-to-date) not copying numpy/f2py/f2py_testing.py (output up-to-date) not copying numpy/f2py/func2subr.py (output up-to-date) not copying numpy/f2py/crackfortran.py (output up-to-date) not copying numpy/f2py/cfuncs.py (output up-to-date) not copying numpy/f2py/__version__.py (output up-to-date) copying numpy/f2py/__svn_version__.py -> build/lib.linux-x86_64-2.5/numpy/f2py not copying numpy/f2py/lib/__init__.py (output up-to-date) not copying numpy/f2py/lib/api.py (output up-to-date) not copying numpy/f2py/lib/nary.py (output up-to-date) not copying numpy/f2py/lib/wrapper_base.py (output up-to-date) not copying numpy/f2py/lib/setup.py (output up-to-date) not copying numpy/f2py/lib/py_wrap.py (output up-to-date) not copying numpy/f2py/lib/py_wrap_type.py (output up-to-date) not copying numpy/f2py/lib/py_wrap_subprogram.py (output up-to-date) not copying numpy/f2py/lib/main.py (output up-to-date) not copying numpy/f2py/lib/parser/block_statements.py (output up-to-date) not copying numpy/f2py/lib/parser/test_parser.py (output up-to-date) not copying numpy/f2py/lib/parser/pattern_tools.py (output up-to-date) not copying numpy/f2py/lib/parser/__init__.py (output up-to-date) not copying numpy/f2py/lib/parser/utils.py (output up-to-date) not copying numpy/f2py/lib/parser/parsefortran.py (output up-to-date) not copying numpy/f2py/lib/parser/splitline.py (output up-to-date) not copying numpy/f2py/lib/parser/test_Fortran2003.py (output up-to-date) not copying numpy/f2py/lib/parser/readfortran.py (output up-to-date) not copying numpy/f2py/lib/parser/api.py (output up-to-date) not copying numpy/f2py/lib/parser/sourceinfo.py (output up-to-date) not copying numpy/f2py/lib/parser/typedecl_statements.py (output up-to-date) not copying numpy/f2py/lib/parser/Fortran2003.py (output up-to-date) not copying numpy/f2py/lib/parser/statements.py (output up-to-date) not copying numpy/f2py/lib/parser/base_classes.py (output up-to-date) not copying numpy/core/__init__.py (output up-to-date) not copying numpy/core/info.py (output up-to-date) not copying numpy/core/ma.py (output up-to-date) not copying numpy/core/defchararray.py (output up-to-date) not copying numpy/core/arrayprint.py (output up-to-date) not copying numpy/core/records.py (output up-to-date) not copying numpy/core/setup.py (output up-to-date) not copying numpy/core/fromnumeric.py (output up-to-date) not copying numpy/core/numeric.py (output up-to-date) not copying numpy/core/_internal.py (output up-to-date) not copying numpy/core/memmap.py (output up-to-date) not copying numpy/core/defmatrix.py (output up-to-date) not copying numpy/core/numerictypes.py (output up-to-date) not copying numpy/core/__svn_version__.py (output up-to-date) not copying numpy/core/code_generators/generate_array_api.py (output up-to-date) not copying numpy/core/__init__.py (output up-to-date) not copying numpy/core/info.py (output up-to-date) not copying numpy/core/ma.py (output up-to-date) not copying numpy/core/defchararray.py (output up-to-date) not copying numpy/core/arrayprint.py (output up-to-date) not copying numpy/core/records.py (output up-to-date) not copying numpy/core/setup.py (output up-to-date) not copying numpy/core/fromnumeric.py (output up-to-date) not copying numpy/core/numeric.py (output up-to-date) not copying numpy/core/_internal.py (output up-to-date) not copying numpy/core/memmap.py (output up-to-date) not copying numpy/core/defmatrix.py (output up-to-date) not copying numpy/core/numerictypes.py (output up-to-date) not copying numpy/core/__svn_version__.py (output up-to-date) not copying numpy/lib/shape_base.py (output up-to-date) not copying numpy/lib/scimath.py (output up-to-date) not copying numpy/lib/twodim_base.py (output up-to-date) not copying numpy/lib/machar.py (output up-to-date) not copying numpy/lib/info.py (output up-to-date) not copying numpy/lib/arraysetops.py (output up-to-date) not copying numpy/lib/__init__.py (output up-to-date) not copying numpy/lib/setup.py (output up-to-date) not copying numpy/lib/utils.py (output up-to-date) not copying numpy/lib/getlimits.py (output up-to-date) not copying numpy/lib/convdtype.py (output up-to-date) not copying numpy/lib/user_array.py (output up-to-date) not copying numpy/lib/type_check.py (output up-to-date) not copying numpy/lib/function_base.py (output up-to-date) not copying numpy/lib/polynomial.py (output up-to-date) not copying numpy/lib/ufunclike.py (output up-to-date) not copying numpy/lib/index_tricks.py (output up-to-date) not copying numpy/oldnumeric/user_array.py (output up-to-date) not copying numpy/oldnumeric/precision.py (output up-to-date) not copying numpy/oldnumeric/misc.py (output up-to-date) not copying numpy/oldnumeric/ma.py (output up-to-date) not copying numpy/oldnumeric/__init__.py (output up-to-date) not copying numpy/oldnumeric/setup.py (output up-to-date) not copying numpy/oldnumeric/ufuncs.py (output up-to-date) not copying numpy/oldnumeric/matrix.py (output up-to-date) not copying numpy/oldnumeric/rng_stats.py (output up-to-date) not copying numpy/oldnumeric/typeconv.py (output up-to-date) not copying numpy/oldnumeric/functions.py (output up-to-date) not copying numpy/oldnumeric/mlab.py (output up-to-date) not copying numpy/oldnumeric/fix_default_axis.py (output up-to-date) not copying numpy/oldnumeric/random_array.py (output up-to-date) not copying numpy/oldnumeric/compat.py (output up-to-date) not copying numpy/oldnumeric/fft.py (output up-to-date) not copying numpy/oldnumeric/linear_algebra.py (output up-to-date) not copying numpy/oldnumeric/array_printer.py (output up-to-date) not copying numpy/oldnumeric/alter_code1.py (output up-to-date) not copying numpy/oldnumeric/alter_code2.py (output up-to-date) not copying numpy/oldnumeric/arrayfns.py (output up-to-date) not copying numpy/oldnumeric/rng.py (output up-to-date) not copying numpy/numarray/random_array.py (output up-to-date) not copying numpy/numarray/convolve.py (output up-to-date) not copying numpy/numarray/ma.py (output up-to-date) not copying numpy/numarray/__init__.py (output up-to-date) not copying numpy/numarray/setup.py (output up-to-date) not copying numpy/numarray/nd_image.py (output up-to-date) not copying numpy/numarray/ufuncs.py (output up-to-date) not copying numpy/numarray/matrix.py (output up-to-date) not copying numpy/numarray/functions.py (output up-to-date) not copying numpy/numarray/mlab.py (output up-to-date) not copying numpy/numarray/util.py (output up-to-date) not copying numpy/numarray/compat.py (output up-to-date) not copying numpy/numarray/fft.py (output up-to-date) not copying numpy/numarray/image.py (output up-to-date) not copying numpy/numarray/linear_algebra.py (output up-to-date) not copying numpy/numarray/alter_code1.py (output up-to-date) not copying numpy/numarray/alter_code2.py (output up-to-date) not copying numpy/numarray/session.py (output up-to-date) not copying numpy/numarray/numerictypes.py (output up-to-date) not copying numpy/fft/info.py (output up-to-date) not copying numpy/fft/setup.py (output up-to-date) not copying numpy/fft/fftpack.py (output up-to-date) not copying numpy/fft/__init__.py (output up-to-date) not copying numpy/fft/helper.py (output up-to-date) not copying numpy/linalg/info.py (output up-to-date) not copying numpy/linalg/__init__.py (output up-to-date) not copying numpy/linalg/setup.py (output up-to-date) not copying numpy/linalg/linalg.py (output up-to-date) not copying numpy/random/__init__.py (output up-to-date) not copying numpy/random/info.py (output up-to-date) not copying numpy/random/setup.py (output up-to-date) running build_ext new_compiler returns distutils.unixccompiler.UnixCCompiler customize UnixCCompiler customize UnixCCompiler using build_ext ******************************************************************************** distutils.unixccompiler.UnixCCompiler compiler_cxx = ['g++', '-pthread'] ranlib = None linker_exe = ['gcc', '-pthread'] compiler_so = ['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC'] archiver = ['ar', '-cr'] preprocessor = ['gcc', '-pthread', '-E'] linker_so = ['gcc', '-pthread', '-shared'] compiler = ['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes'] libraries = [] library_dirs = [] include_dirs = ['numpy/core/src', 'numpy/core/include', '/u/vento0/myeates/include/python2.5'] ******************************************************************************** customize Gnu95FCompiler exec_command('/u/vento0/myeates/bin/gfortran --version',) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/PEs4_F ) > /u/vento0/myeates/tmp/tmpLMMu5C/krrA6w 2>&1') _update_environment(...) exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/qq9gdt ) > /u/vento0/myeates/tmp/tmpLMMu5C/Eb75jq 2>&1') _update_environment(...) customize Gnu95FCompiler using build_ext ******************************************************************************** numpy.distutils.fcompiler.gnu.Gnu95FCompiler compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] ranlib = ['/u/vento0/myeates/bin/gfortran'] linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall'] archiver = ['/u/vento0/myeates/bin/gfortran', '-cr'] version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version'] linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared'] compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse'] version = LooseVersion ('4.2.0') libraries = ['gfortran'] library_dirs = [] object_switch = '-o ' compile_switch = '-c' include_dirs = ['numpy/core/src', 'numpy/core/include', '/u/vento0/myeates/include/python2.5'] ******************************************************************************** building 'numpy.core.multiarray' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC compile options: '-Ibuild/src.linux-x86_64-2.5/numpy/core/src -Inumpy/core/include -Ibuild/src.linux-x86_64-2.5/numpy/core -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c' gcc: numpy/core/src/multiarraymodule.c exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-Ibuild/src.linux-x86_64-2.5/numpy/core/src', '-Inumpy/core/include', '-Ibuild/src.linux-x86_64-2.5/numpy/core', '-Inumpy/core/src', '-Inumpy/core/include', '-I/u/vento0/myeates/include/python2.5', '-c', 'numpy/core/src/multiarraymodule.c', '-o', 'build/temp.linux-x86_64-2.5/numpy/core/src/multiarraymodule.o'],) Retaining cwd: /u/vento0/myeates/numpy _preserve_environment([]) _update_environment(...) _exec_command_posix(...) Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.5/numpy/core/src -Inumpy/core/include -Ibuild/src.linux-x86_64-2.5/numpy/core -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c numpy/core/src/multiarraymodule.c -o build/temp.linux-x86_64-2.5/numpy/core/src/multiarraymodule.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/hVP9_- ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/vOvNwy ') numpy/core/src/multiarraymodule.c: In function ‘initmultiarray’: numpy/core/src/multiarraymodule.c:7563: error: ‘NPY_ALLOW_THREADS’ undeclared (first use in this function) numpy/core/src/multiarraymodule.c:7563: error: (Each undeclared identifier is reported only once numpy/core/src/multiarraymodule.c:7563: error: for each function it appears in.) _update_environment(...) numpy/core/src/multiarraymodule.c: In function ‘initmultiarray’: numpy/core/src/multiarraymodule.c:7563: error: ‘NPY_ALLOW_THREADS’ undeclared (first use in this function) numpy/core/src/multiarraymodule.c:7563: error: (Each undeclared identifier is reported only once numpy/core/src/multiarraymodule.c:7563: error: for each function it appears in.) error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.5/numpy/core/src -Inumpy/core/include -Ibuild/src.linux-x86_64-2.5/numpy/core -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c numpy/core/src/multiarraymodule.c -o build/temp.linux-x86_64-2.5/numpy/core/src/multiarraymodule.o" failed with exit status 1 removing /u/vento0/myeates/tmp/tmpLMMu5C __________ NOD32 2368 (20070701) Information __________ This message was checked by NOD32 antivirus system. http://www.eset.com

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