Ryan Teo @teojcryan

[1] Embracing Metagenomic Complexity with a Genome-Free Approach

[2] How to apply de Bruijn graphs to genome assembly

[3] Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years

[4] fastp: An ultra-fast all-in-one FASTQ preprocessor

[5] seqkit: A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

[6] KMC: Fast and frugal disk based k-mer counter

[7] Exploring Network Structure, Dynamics, and Function using NetworkX

[8] Gephi: An Open Source Software for Exploring and Manipulating Networks

[9] visNetwork: R package, using vis.js library for network visualization

[10] BLAST+: architecture and applications

[1]: A Global Nucleic Acid Observatory for Biodefense and Planetary Health

[2]: Managing the Transition to Widespread Metagenomic Monitoring: Policy Considerations for Future Biosurveillance

[3]: Improved metagenomic analysis with Kraken 2

[4]: Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

[5]: Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years