While this is mostly a CLI binary around bustools, some functionality might be useful as a library, in particular the [count], [count2] and [butterfly] modules.

Readme

Rust version of bustools command line interface. Built on the bustools_core library crate.

Example

# sorting
rustbustools --output /tmp/sorted.bus sort --ifile /tmp/unsorted.bus

# correcting CBs
rustbustools --output /tmp/corrected.bus sort --ifile /tmp/sorted.bus --whitelist /tmp/10x_whitelist.txt

# inspecting
rustbustools --output /dev/null --ifile /tmp/sorted.bus

# count
rustbustools --output /tmp/count_folder --ifile /tmp/sorted.bus --t2g /tmp/transcripts_to_gene.txt

# compression
# -N is the chunksize of a busz block
rustbustools --output /tmp/compressed.busz -i /tmp/sorted.bus -N 10000

# decompression
rustbustools --output /tmp/plain.bus -i /tmp/compressed.busz