diff options
| author | Étienne Mollier <emollier@debian.org> | 2024-07-03 23:22:55 +0200 |
|---|---|---|
| committer | git-ubuntu importer <ubuntu-devel-discuss@lists.ubuntu.com> | 2024-07-04 10:36:26 +0000 |
| commit | 3d7852c7bbe3c2dcfe1cdd4253af170fbd54cf00 (patch) | |
| tree | f3608a35d4c733b6dfda05f87c23b3304a1e2ba5 | |
| parent | d9d38ca86c42f0b2023c221028e2a130d42b60ef (diff) | |
0.3.1-3 (patches unapplied)import/0.3.1-3ubuntu/oracular-proposedubuntu/oracular-develubuntu/oracular
Imported using git-ubuntu import.
Notes
Notes:
* d/control: declare compliance to standards version 4.7.0.
* d/control: add myself to uploaders.
* d/control: indicate that architecture-is-little-endian.
* gcc-14.patch: new: fix incompatible pointer type conversion.
(Closes: #1075421)
| -rw-r--r-- | debian/changelog | 10 | ||||
| -rw-r--r-- | debian/control | 14 | ||||
| -rw-r--r-- | debian/patches/gcc-14.patch | 30 | ||||
| -rw-r--r-- | debian/patches/series | 1 |
4 files changed, 50 insertions, 5 deletions
diff --git a/debian/changelog b/debian/changelog index 6f176e3..a3b676d 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,13 @@ +python-py2bit (0.3.1-3) unstable; urgency=medium + + * d/control: declare compliance to standards version 4.7.0. + * d/control: add myself to uploaders. + * d/control: indicate that architecture-is-little-endian. + * gcc-14.patch: new: fix incompatible pointer type conversion. + (Closes: #1075421) + + -- Étienne Mollier <emollier@debian.org> Wed, 03 Jul 2024 23:22:55 +0200 + python-py2bit (0.3.1-2) unstable; urgency=medium * Team upload. diff --git a/debian/control b/debian/control index 5b06ccb..8c2fc16 100644 --- a/debian/control +++ b/debian/control @@ -2,10 +2,14 @@ Source: python-py2bit Section: science Priority: optional Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> -Uploaders: Steffen Moeller <moeller@debian.org> -Build-Depends: debhelper-compat (= 13), dh-sequence-python3, - python3-all-dev, python3-setuptools -Standards-Version: 4.6.2 +Uploaders: Steffen Moeller <moeller@debian.org>, + Étienne Mollier <emollier@debian.org> +Build-Depends: debhelper-compat (= 13), + architecture-is-little-endian, + dh-sequence-python3, + python3-all-dev, + python3-setuptools +Standards-Version: 4.7.0 Homepage: https://github.com/deeptools/py2bit/ Vcs-Browser: https://salsa.debian.org/med-team/python-py2bit Vcs-Git: https://salsa.debian.org/med-team/python-py2bit.git @@ -14,7 +18,7 @@ Rules-Requires-Root: no Package: python3-py2bit Section: python -Architecture: any-amd64 ppc64el any-ia64 arm64 armel armhf any-i386 loong64 mips64el mipsel alpha riscv64 sh4 x32 +Architecture: any Depends: ${python3:Depends}, ${misc:Depends}, ${shlibs:Depends} Description: access to 2bit files From https://genome.ucsc.edu/FAQ/FAQformat.html#format7: diff --git a/debian/patches/gcc-14.patch b/debian/patches/gcc-14.patch new file mode 100644 index 0000000..00e79d3 --- /dev/null +++ b/debian/patches/gcc-14.patch @@ -0,0 +1,30 @@ +Description: fix potential pointer bug flagged by gcc-14. + Since gcc 14, a whole range of warnings have become errors, notably the + casting from incompatible pointer types. In the case of py2bit, this + seems to flag a real pointer arithmetic bug. The symptom on build time + is: + . + py2bit.c:35:24: error: initialization of ‘pyTwoBit_t *’ from incompatible pointer type ‘TwoBit *’ [-Wincompatible-pointer-types] + 35 | pyTwoBit_t *pytb = self->tb; + | ^~~~ + . + Transmitting the self pointer straight to the pytb pointer newly + created without referencing to the TwoBit_t pointer, fixes the issue. + +Author: Étienne Mollier <emollier@debian.org> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1075421 +Forwarded: https://github.com/deeptools/py2bit/pull/14 +Last-Update: 2024-07-03 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-py2bit.orig/py2bit.c ++++ python-py2bit/py2bit.c +@@ -32,7 +32,7 @@ + } + + PyObject *py2bitEnter(pyTwoBit_t *self, PyObject *args) { +- pyTwoBit_t *pytb = self->tb; ++ pyTwoBit_t *pytb = self; + + if(!pytb) { + PyErr_SetString(PyExc_RuntimeError, "The 2bit file handle is not open!"); diff --git a/debian/patches/series b/debian/patches/series index e78b3cb..83bd7f7 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1 +1,2 @@ enable-tests.patch +gcc-14.patch |